PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012094P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ZF-HD
Protein Properties Length: 217aa    MW: 24495.7 Da    PI: 9.0725
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012094P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.39e-34359459
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                    + YkeClkNhAa++Ggha+DGCgEfmps +++ +++++l+CaACgCHRnFHRre+++
  MELO3C012094P1  3 ISYKECLKNHAAAVGGHALDGCGEFMPSITSTpTDPTSLNCAACGCHRNFHRRESDD 59
                    68**************************99999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-17362IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.6E-28357IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.0E-31556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.12556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.5E-25120192IPR009057Homeodomain-like
SuperFamilySSF466892.69E-16127191IPR009057Homeodomain-like
TIGRFAMsTIGR015655.2E-24133190IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MLISYKECLK NHAAAVGGHA LDGCGEFMPS ITSTPTDPTS LNCAACGCHR NFHRRESDDS  60
WPNRRYYPYR LCAPPSPRSS RIKSQSPSSP IPLPISHIPP PVQFSGPHML MALSTEAAAE  120
EEEEEEELRR KQRKRKRTKF SGEQKEKMQL FSEKMGWRIG KSEERLVEEF CKEIGIGKRV  180
LRVWMHNNKY MGGKTEKNRA SQSSEENGGN DSKQSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-191341921876ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446349.11e-161PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9SEZ12e-57ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A0A0KSP21e-134A0A0A0KSP2_CUCSA; ZF-HD homeobox domain-containing protein
STRINGAT1G69600.15e-55(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.16e-42homeobox protein 30